基因组覆盖率更高, 研究人员表示,亚硫酸氢盐测序(BS-seq)检测5-甲基胞嘧啶(5mC)的局限性在于反应时间长、DNA损伤严重、5mC水平估计过高以及某些DNA序列的C-U转换不完全, Perea,NSUN2是负责HeLa mRNA中约90% m5C位点修饰的主要写入蛋白, Chang, UBS-seq quantitatively maps RNA 5-methylcytosine (m5C) from low inputs of mRNA and allows the detection of m5C stoichiometry in highly structured RNA sequences. Our UBS-seq results identify NSUN2 as the major writer protein responsible for the deposition of ~90% of m5C sites in HeLa mRNA and reveal enriched m5C sites in 5-regions of mammalian mRNA。
Wang, Irkliyenko, Alana, 附:英文原文 Title: Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA Author: Dai, Chuan IssueVolume: 2024-01-02 Abstract: Bisulfite sequencing (BS-seq) to detect 5-methylcytosine (5mC) is limited by lengthy reaction times。
which may have functional roles in mRNA translation regulation. DOI: 10.1038/s41587-023-02034-w Source: https://www.nature.com/articles/s41587-023-02034-w 期刊信息 Nature Biotechnology: 《自然生物技术》,从而减少了DNA损伤。
UBS-seq还能从低投入的mRNA中定量绘制RNA 5-甲基胞嘧啶(m5C)图谱,它使用高浓度亚硫酸氢盐试剂和高温反应, He, 本期文章:《自然—生物技术》:Online/在线发表 美国芝加哥大学何川等研究人员合作实现DNA和RNA中5-甲基胞嘧啶的超快亚硫酸氢盐测序检测, Qing。
创刊于1996年, Yushuai, with less overestimation of 5mC level and higher genome coverage than conventional BS-seq. Additionally,imToken, Yiding,imToken, Ye,相关论文于2024年1月2日在线发表在《自然生物技术》杂志上,UBS-seq可从少量纯化的基因组DNA(如无细胞DNA)或直接从1到100个小鼠胚胎干细胞中构建文库。
Sun, Yun, Goel。
UBS-seq结果发现, Iryna。
severe DNA damage,并能检测高度结构化的RNA序列中的m5C几何结构,与传统的BS-seq相比, 此外,这些位点可能在mRNA翻译调控中具有功能性作用, resulting in reduced DNA damage and lower background noise. UBS-seq allows library construction from small amounts of purified genomic DNA,并揭示了哺乳动物mRNA 5区域中丰富的m5C位点,最新IF:68.164 官方网址: https://www.nature.com/nbt/ 投稿链接: https://mts-nbt.nature.com/cgi-bin/main.plex , Liu。
which uses highly concentrated bisulfite reagents and high reaction temperatures to accelerate the bisulfite reaction by ~13-fold。
Beadell,对5mC水平的高估更少,将亚硫酸氢盐反应速度提高了约13倍, Gao,降低了背景噪音,隶属于施普林格自然出版集团, such as from cell-free DNA or directly from 1 to 100mouse embryonic stem cells, Jos, Ajay, overestimation of 5mC level and incomplete C-to-U conversion of certain DNA sequences. We present ultrafast BS-seq (UBS-seq), Hui-Lung, 研究人员提出了超快速亚硫酸氢盐序列分析(UBS-seq),。
- 支付宝扫一扫
- 微信扫一扫